Function reference
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acid_discrete_coord_flip() - Flip coordinates
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acid_geom_abline() - Reference line
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acid_geom_bar() - Bar chart
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acid_geom_label() - Text label
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acid_geom_label_average() - Average labels
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acid_geom_label_repel() - Repulsive textual annotations
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acid_pretty_breaks() - Pretty breaks that resemble the base plotting engine
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acid_scale_y_continuous_nopad() - Remove Y axis padding
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acid_scale_color_continuous()acid_scale_fill_continuous()acid_scale_color_discrete()acid_scale_fill_discrete() - Automatic color/fill scales to use with ggplot object
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gradient()blueYellow()purpleOrange() - Hex color gradient generator
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matchLabels() - Match ggplot2 labels
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draculaPalettedarkPalettelightPaletteiOSDarkPaletteiOSLightPalettemacOSDarkPalettemacOSLightPalette - Color palettes
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plotBarcodeRanks() - Plot barcode ranks
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plotCellCounts() - Plot cell counts
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plotCellCountsPerCluster() - Plot cell counts per cluster
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plotCellTypesPerCluster() - Plot cell types per cluster
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plotCorrelation() - Correlation X-Y scatterplot
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plotCorrelationHeatmap() - Correlation heatmap
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plotCounts()plotDots()plotViolin() - Plot counts
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plotCountsCorrelation() - Plot counts correlation
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plotCountsCorrelationHeatmap() - Plot counts correlation heatmap
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plotCountsPerBiotype()plotCountsPerBroadClass() - Plot counts per biotype
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plotCountsPerCell() - Plot counts per cell
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plotCountsPerFeature() - Plot counts per feature
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plotCountsVsFeatures() - Plot count and feature correlation
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plotFeature() - Plot feature
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plotFeaturesDetectedplotFeaturesDetected(<SingleCellExperiment>)plotFeaturesDetected(<SummarizedExperiment>) - Plot features detected
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plotFeaturesPerCell() - Plot features per cell
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plotGenderMarkers() - Plot sexually dimorphic gender marker genes
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plotHeatmap() - Heatmap
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plotKnownMarkers() - Plot known markers
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plotMarker() - Plot cell-type-specific gene markers
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plotMitoRatio() - Plot mitochondrial transcript abundance
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plotMitoVsCoding() - Plot mitochondrial vs. coding counts
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plotNovelty() - Plot novelty score
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plotQc() - Quality control
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plotQuantileHeatmap() - Quantile heatmap
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plotPca()plotReducedDim()plotTsne()plotUmap() - Plot reduced dimensions
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plotStackedBarPlot() - Plot stacked bar plot
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plotSums() - Plot row or column sums
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plotTotalCounts() - Plot total read counts
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plotUpset() - UpSet plot
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plotWaterfall() - Plot waterfall
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plotZerosVsDepth() - Plot percentage of zeros vs. library depth
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synesthesia()synesthesia_pal()scale_colour_synesthesia_c()acid_scale_color_synesthesia_c()scale_colour_synesthesia_d()acid_scale_color_synesthesia_d()acid_scale_fill_synesthesia_c()acid_scale_fill_synesthesia_d() - Synesthesia color palette
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acid_theme_light()acid_theme_dark()acid_theme_dracula() - ggplot2 themes