Package index • AcidPlots

All functions

acid_discrete_coord_flip(): Flip coordinates

acid_geom_abline(): Reference line

acid_geom_bar(): Bar chart

acid_geom_label(): Text label

acid_geom_label_average(): Average labels

acid_geom_label_repel(): Repulsive textual annotations

acid_pretty_breaks(): Pretty breaks that resemble the base plotting engine

acid_scale_y_continuous_nopad(): Remove Y axis padding

acid_scale_color_continuous() acid_scale_fill_continuous() acid_scale_color_discrete() acid_scale_fill_discrete(): Automatic color/fill scales to use with ggplot object

gradient() blueYellow() purpleOrange(): Hex color gradient generator

matchLabels(): Match ggplot2 labels

draculaPalette darkPalette lightPalette iOSDarkPalette iOSLightPalette macOSDarkPalette macOSLightPalette: Color palettes

plotBarcodeRanks(): Plot barcode ranks

plotCellCounts(): Plot cell counts

plotCellCountsPerCluster(): Plot cell counts per cluster

plotCellTypesPerCluster(): Plot cell types per cluster

plotCorrelation(): Correlation X-Y scatterplot

plotCorrelationHeatmap(): Correlation heatmap

plotCounts() plotDots() plotViolin(): Plot counts

plotCountsCorrelation(): Plot counts correlation

plotCountsCorrelationHeatmap(): Plot counts correlation heatmap

plotCountsPerBiotype() plotCountsPerBroadClass(): Plot counts per biotype

plotCountsPerCell(): Plot counts per cell

plotCountsPerFeature(): Plot counts per feature

plotCountsVsFeatures(): Plot count and feature correlation

plotFeature(): Plot feature

plotFeaturesDetected plotFeaturesDetected(<SingleCellExperiment>) plotFeaturesDetected(<SummarizedExperiment>): Plot features detected

plotFeaturesPerCell(): Plot features per cell

plotGenderMarkers(): Plot sexually dimorphic gender marker genes

plotHeatmap(): Heatmap

plotKnownMarkers(): Plot known markers

plotMarker(): Plot cell-type-specific gene markers

plotMitoRatio(): Plot mitochondrial transcript abundance

plotMitoVsCoding(): Plot mitochondrial vs. coding counts

plotNovelty(): Plot novelty score

plotQc(): Quality control

plotQuantileHeatmap(): Quantile heatmap

plotPca() plotReducedDim() plotTsne() plotUmap(): Plot reduced dimensions

plotStackedBarPlot(): Plot stacked bar plot

plotSums(): Plot row or column sums

plotTotalCounts(): Plot total read counts

plotUpset(): UpSet plot

plotWaterfall(): Plot waterfall

plotZerosVsDepth(): Plot percentage of zeros vs. library depth

synesthesia() synesthesia_pal() scale_colour_synesthesia_c() acid_scale_color_synesthesia_c() scale_colour_synesthesia_d() acid_scale_color_synesthesia_d() acid_scale_fill_synesthesia_c() acid_scale_fill_synesthesia_d(): Synesthesia color palette

acid_theme_light() acid_theme_dark() acid_theme_dracula(): ggplot2 themes