Plot known markers

Plot known markers

Usage

plotKnownMarkers(object, markers, ...)

# S4 method for SingleCellExperiment,KnownMarkers
plotKnownMarkers(object, markers, reduction = "UMAP", headerLevel = 2L, ...)

Arguments

object

Object.

markers

Object.

reduction

vector(1). Dimension reduction name or index position.

headerLevel

integer(1) (1-7). Markdown header level.

...

Passthrough arguments to plotMarker().

Value

Show graphical output. Invisibly return a ggplot

list.

Note

Updated 2023-08-17.

Examples

data(
    KnownMarkers,
    SingleCellExperiment_Seurat,
    package = "AcidTest"
)

## SingleCellExperiment ====
object <- SingleCellExperiment_Seurat
markers <- KnownMarkers
plotKnownMarkers(
    object = object,
    markers = markers,
    reduction = "UMAP"
)
#> 
#> 
#> ## Dendritic Cell {.tabset}
#> 





#> 
#> 
#> ## Macrophage {.tabset}
#>