Plot novelty score

"Novelty" refers to log10 genes detected per count.

Usage

plotNovelty(object, ...)

# S4 method for class 'SingleCellExperiment'
plotNovelty(
  object,
  geom = c("histogram", "ecdf", "violin", "ridgeline", "boxplot"),
  interestingGroups = NULL,
  min = 0L,
  trans = "identity",
  labels = list(title = "Novelty", subtitle = NULL, metricAxis = NULL, otherAxis = NULL)
)

Arguments

object

Object.

geom

character(1). Plot type. Uses match.arg() internally and defaults to the first argument in the character vector.

interestingGroups

character. Groups of interest to use for visualization. Corresponds to factors describing the columns of the object.

min

numeric(1). Recommended minimum value cutoff.

trans

character(1). Name of the axis scale transformation to apply.

For more information:

help(topic = "scale_x_continuous", package = "ggplot2")

labels

list. ggplot2 labels. See ggplot2::labs() for details.

...

Additional arguments.

Value

ggplot.

Note

Updated 2022-03-07.

Author

Michael Steinbaugh

Examples

data(SingleCellExperiment_splatter, package = "AcidTest")

## SingleCellExperiment ====
object <- SingleCellExperiment_splatter
plotNovelty(object)