Plot mitochondrial transcript abundance
Source:R/AllGenerics.R
, R/plotMitoRatio-methods.R
plotMitoRatio.Rd
Plot mitochondrial transcript abundance
Usage
plotMitoRatio(object, ...)
# S4 method for class 'SingleCellExperiment'
plotMitoRatio(
object,
geom = c("histogram", "ecdf", "violin", "ridgeline", "boxplot"),
interestingGroups = NULL,
max = 1L,
trans = "sqrt",
labels = list(title = "Mito ratio", subtitle = NULL, metricAxis = NULL, otherAxis =
NULL)
)
Arguments
- object
Object.
- geom
character(1)
. Plot type. Usesmatch.arg()
internally and defaults to the first argument in thecharacter
vector.- interestingGroups
character
. Groups of interest to use for visualization. Corresponds to factors describing the columns of the object.- max
numeric(1)
. Recommended maximum value cutoff.- trans
character(1)
. Name of the axis scale transformation to apply.For more information:
- labels
list
. ggplot2 labels. Seeggplot2::labs()
for details.- ...
Additional arguments.