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Plot row or column sums

Source: R/AllGenerics.R, R/plotSums-methods.R
plotSums.Rd

Visualize row or column sums using empirical cumulative distribution function (ECDF) plot.

Usage

plotSums(object, ...)

# S4 method for class 'SummarizedExperiment'
plotSums(
  object,
  MARGIN,
  assay = 1L,
  interestingGroups = NULL,
  labels = list(title = NULL, subtitle = NULL)
)

Arguments

object

Object.

MARGIN

integer(1-2). Dimension where the function will be applied. For a two-dimensional matrix: 1 indicates rows; 2 indicates columns; c(1, 2) indicates rows and columns.

assay

vector(1). Assay name or index position.

interestingGroups

character. Groups of interest to use for visualization. Corresponds to factors describing the columns of the object.

labels

list. ggplot2 labels. See ggplot2::labs() for details.

...

Additional arguments.

Value

ggplot.

Note

Updated 2023-08-10.

Examples

data(
    RangedSummarizedExperiment,
    package = "AcidTest"
)

## SummarizedExperiment ====
object <- RangedSummarizedExperiment
plotSums(object, MARGIN = 1L)

plotSums(object, MARGIN = 2L)