Function reference • AcidDevTools

All functions

AcidDevTools AcidDevTools-package: AcidDevTools

cd() clear() d() la(): Aliases

build(): Build source and binary packages

cacheTestFiles(): Cache test files from Acid Genomics S3 bucket

catVec(): Print (cat) a vector to console

check(): Check package

currentBiocVersion(): Current Bioconductor release version

devinstall(): Install package in development

fibonacciSequence(): Fibonacci sequence

findAndReplace(): Find and replace in files across a directory

finder(): Open Finder to the current directory

getCurrentGitHubVersion(): Get current release version of package from GitHub

install(): Install packages from Bioconductor, CRAN, or a Git remote

installAcidverse(): Install Acid Genomics packages

installFromGitHub(): Install packages from GitHub

installRecommendedPackages(): Install recommended R packages

installedPackages(): Find installed packages

kill() killAll(): Kill R session

nonCamelArgs(): Return documentation with arguments that are not formatted in strict lower camel case

nonCamelExports(): Return exports that are not formatted in strict camel case

packageDependencies(): Package dependencies

parseRd() rdTags(): Parse R documentation

pbcopy(): Copy to clipboard

pkgdownDeployToAws(): Deploy a pkgdown website to AWS S3 bucket

printComment(): Print as comment

publish(): Build packages and publish to Acid Genomics repo

rebuildBinary(): Rebuild a binary tarball from a source tarball

reexports BiocCheck package_coverage percent_coverage report build_vignettes document load_all run_examples lint lint_dir lint_package build_articles build_home build_news build_reference build_reference_index build_site rcmdcheck style_dir style_file style_pkg test_file use_data doc exit: Reexported functions

saveRdExamples(): Save R documentation examples

scriptPath(): Script path

size(): Friendly human readable object size

acid_style(): Acid Genomics styler formatting theme

tabular(): R documentation table

test() longtest(): Execute testthat tests in a package

uninstall(): Uninstall a package

updateDeps(): Update outdated dependencies

updatePackages(): Update all installed packages

valid(): Validate installed package versions against correct versions

view2(): View object