Function reference
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assignAndSaveData()
- Assign and save data
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loadData()
- Load data
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loadDataAsName()
- Load data as name
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loadRemoteData()
- Load remote data
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saveData()
- Save data
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cacheURL()
- Download and cache a file using BiocFileCache
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getJSON()
- Get JSON from an API
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getURLDirList()
- Get remote URL directory listing
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transmit()
- Transmit files from a remote FTP server
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as.DataFrame()
- Coerce object to S4 DataFrame
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as.data.frame()
- Coerce object to data.frame
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assignAndSaveData()
- Assign and save data
-
atomize()
- Atomize
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decode()
- Decode data that uses run-length encoding
-
droplevels2()
- Drop factor levels
-
encode()
- Encode using run-length encoding
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factorize()
- Factorize
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matchRownameColumn()
- Match row name column
-
metadata2()
`metadata2<-`()
- Metadata
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naStrings
- NA strings
-
removeNA()
- Remove rows and columns containing only NA values
-
sanitizeNA()
- Sanitize NA values
-
sanitizePercent()
- Sanitize percentage
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PipetteFile-class
DelimFile-class
ExcelFile-class
LinesFile-class
RioHandoffFile-class
RtracklayerHandoffFile-class
BcbioCountsFile-class
CSVFile-class
FASTAFile-class
FASTQFile-class
GCTFile-class
GMTFile-class
GMXFile-class
GRPFile-class
JSONFile-class
MTXFile-class
OBOFile-class
PZFXFile-class
RDataFile-class
RDSFile-class
TableFile-class
TSVFile-class
YAMLFile-class
- File extension classes