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Import/export

import()
Import
export()
Export

R data

assignAndSaveData()
Assign and save data
loadData()
Load data
loadDataAsName()
Load data as name
loadRemoteData()
Load remote data
saveData()
Save data

File transfers

cacheURL()
Download and cache a file using BiocFileCache
md5() sha256()
Generate checksum from file
getJSON()
Get JSON from an API
getURLDirList()
Get remote URL directory listing
transmit()
Transmit files from a remote FTP server

Coercion

as.DataFrame()
Coerce object to S4 DataFrame
as.data.frame()
Coerce object to data.frame
assignAndSaveData()
Assign and save data

Data modification and sanitization

atomize()
Atomize
decode()
Decode data that uses run-length encoding
encode()
Encode using run-length encoding
factorize()
Factorize
matchRownameColumn()
Match row name column
metadata2() `metadata2<-`()
Metadata
naStrings
NA strings
removeNA()
Remove rows and columns containing only NA values
sanitizeNA()
Sanitize NA values
sanitizePercent()
Sanitize percentage

S4 classes

PipetteFile-class
File extension classes