Function reference • pipette

Import/export

import(): Import

export(): Export

R data

assignAndSaveData(): Assign and save data

loadData(): Load data

loadDataAsName(): Load data as name

loadRemoteData(): Load remote data

saveData(): Save data

File transfers

cacheURL(): Download and cache a file using BiocFileCache

md5() sha256(): Generate checksum from file

getJSON(): Get JSON from an API

getURLDirList(): Get remote URL directory listing

transmit(): Transmit files from a remote FTP server

Coercion

as.DataFrame(): Coerce object to S4 DataFrame

as.data.frame(): Coerce object to data.frame

assignAndSaveData(): Assign and save data

Data modification and sanitization

atomize(): Atomize

decode(): Decode data that uses run-length encoding

droplevels2(): Drop factor levels

encode(): Encode using run-length encoding

factorize(): Factorize

matchRownameColumn(): Match row name column

metadata2() `metadata2<-`(): Metadata

naStrings: NA strings

removeNA(): Remove rows and columns containing only NA values

sanitizeNA(): Sanitize NA values

sanitizePercent(): Sanitize percentage

S4 classes

PipetteFile-class DelimFile-class ExcelFile-class LinesFile-class RioHandoffFile-class RtracklayerHandoffFile-class BcbioCountsFile-class CSVFile-class FASTAFile-class FASTQFile-class GMTFile-class GMXFile-class GRPFile-class JSONFile-class MTXFile-class OBOFile-class PZFXFile-class RDataFile-class RDSFile-class TableFile-class TSVFile-class YAMLFile-class: File extension classes