Currently intended for use with import function.
Primary classes
PipetteBamFile: Binary sequence alignment map (BAM).PipetteBcfFile: Binary variant call format (BCF).PipetteBcbioCountsFile: bcbio-nextgen counts file.PipetteCramFile: Compressed reference-oriented alignment map (CRAM).PipetteCsvFile: Comma-separated values file (CSV).PipetteFastaFile: FASTA file.PipetteFastqFile: FASTQ file.PipetteGafFile: Gene Ontology (GO) annotation file (GAF).PipetteGctFile: Gene Cluster Text file (GCT).PipetteGmtFile: Gene matrix transposed file (GMT).PipetteGmxFile: Gene matrix file (GMX).PipetteGrpFile: Gene set file (GRP).PipetteJsonFile: JSON file.PipetteMafFile: Mutation annotation format file (MAF).PipetteMtxFile: MatrixMarket exchange file (MTX).PipetteOboFile: Open Biomedical Ontologies file (OBO).PipettePzfxFile: GraphPad Prism file (PZFX).PipetteRdsFile: R data file containing a single, serialized object (RDS).PipetteRDataFile: R Data file containing multiple objects (RData/RDA).PipetteSamFile: Sequence alignment map (SAM).PipetteTsvFile: Tab-separated values file (TSV).PipetteTableFile: Base R table file (TXT).PipetteVcfFile: Variant call format (VCF).PipetteYamlFile: YAML file.
PipetteDelimFile-class
Delimited file.
File extension group supporting:
CSV: Comma-separated values
TSV: Tab-separated values
Base R table (TXT)
PipetteLinesFile-class
Source code lines file.
File extension group supporting:
BASH: Bash shell script
LOG: Log file
MD: Markdown file
PY: Python script
R: R script
RMD: R Markdown file
SH: Shell script (e.g. Bash, POSIX)
ZSH: Zsh shell script
PipetteRioFile-class
File extension supported by rio::import.
File extension group supporting:
ARFF: Weka Attribute-Relation File Format
DBF: dBase Database File
DIF: Data Interchange Format
DTA: Stata
FWF: Fixed-width formatting
MAT: Matlab
MTP: Minitab
ODS: OpenDocument (LibreOffice)
POR: SPSS
PSV: Pipe-separated values
SAS7BDAT: SASS
SAV: SPSS
SYD: Systat
REC: Epi Info
XPT: SASS