All functions

aggregateCellsToSamples()

Aggregate cells to samples

aggregateCols()

Aggregate columns

cell2sample()

Cell-to-sample mappings

combine()

Combine multiple objects

convertSampleIDsToNames()

Convert sample identifiers to names

export()

Export

filterCells()

Filter cells

geometricMean()

Geometric mean

makeSingleCellExperiment()

Make a SingleCellExperiment object

mapCellsToSamples()

Map cells to samples

melt()

Melt columns into key-value pairs

metrics() metricsPerSample()

Quality control metrics

sampleData() `sampleData<-`()

Sample data

selectSamples()

Select samples

subsetPerSample()

Subset per sample

topCellsPerSample()

Top cells per sample

zerosVsDepth()

Percentage of zeros vs. library depth