Toolkit for single-cell RNA-seq analysis that extends the functionality of SingleCellExperiment.
Installation
This is an R package.
if (!requireNamespace("BiocManager", quietly = TRUE)) {
install.packages("BiocManager")
}
install.packages(
pkgs = "AcidSingleCell",
repos = c(
"https://r.acidgenomics.com",
BiocManager::repositories()
),
dependencies = TRUE
)
Docker method
image="acidgenomics/r-acidsinglecell"
workdir="/mnt/work"
docker pull "$image"
docker run -it \
--volume="${PWD}:${workdir}" \
--workdir="$workdir" \
"$image" \
R