Get available case lists for a specific cancer study
Arguments
- cancerStudy
character(1). Cancer study identifier (e.g. "ccle_broad_2019"). Refer tocancerStudies()for details.
Examples
x <- caseLists(cancerStudy = "ccle_broad_2019")
print(x)
#> DataFrame with 7 rows and 5 columns
#> caseListId
#> <character>
#> ccle_broad_2019_all ccle_broad_2019_all
#> ccle_broad_2019_auc ccle_broad_2019_auc
#> ccle_broad_2019_cna ccle_broad_2019_cna
#> ccle_broad_2019_cnaseq ccle_broad_2019_cnaseq
#> ccle_broad_2019_protein_quantification ccle_broad_2019_prot..
#> ccle_broad_2019_sequenced ccle_broad_2019_sequ..
#> ccle_broad_2019_treatment ccle_broad_2019_trea..
#> caseListName
#> <character>
#> ccle_broad_2019_all All samples
#> ccle_broad_2019_auc Treatment Response -..
#> ccle_broad_2019_cna Samples with CNA data
#> ccle_broad_2019_cnaseq Samples with mutatio..
#> ccle_broad_2019_protein_quantification Cell lines used in p..
#> ccle_broad_2019_sequenced Samples with mutatio..
#> ccle_broad_2019_treatment Samples with treatme..
#> caseListDescription cancerStudyId
#> <character> <integer>
#> ccle_broad_2019_all All samples (1739 sa.. 415
#> ccle_broad_2019_auc Treatment Response -.. 415
#> ccle_broad_2019_cna Samples with CNA dat.. 415
#> ccle_broad_2019_cnaseq Samples with mutatio.. 415
#> ccle_broad_2019_protein_quantification Cell lines used in p.. 415
#> ccle_broad_2019_sequenced Samples with mutatio.. 415
#> ccle_broad_2019_treatment Samples with treatme.. 415
#> caseIds
#> <CharacterList>
#> ccle_broad_2019_all 127399_SOFT_TISSUE,1321N1_CENTRAL_NERVO..,143B_BONE,...
#> ccle_broad_2019_auc 201T_LUNG,22RV1_PROSTATE,2313287_STOMACH,...
#> ccle_broad_2019_cna A101D_SKIN,A1207_CENTRAL_NERVOU..,A172_CENTRAL_NERVOUS..,...
#> ccle_broad_2019_cnaseq A101D_SKIN,A1207_CENTRAL_NERVOU..,A172_CENTRAL_NERVOUS..,...
#> ccle_broad_2019_protein_quantification 22RV1_PROSTATE,697_HAEMATOPOIETIC_A..,769P_KIDNEY,...
#> ccle_broad_2019_sequenced 127399_SOFT_TISSUE,201T_LUNG,22RV1_PROSTATE,...
#> ccle_broad_2019_treatment 201T_LUNG,22RV1_PROSTATE,2313287_STOMACH,...