Queries for datasets available on Cancer Genomics Data Server (CDGS).
Examples
x <- cancerStudies()
print(x)
#> DataFrame with 344 rows and 3 columns
#> cancerStudyId name
#> <character> <character>
#> acbc_mskcc_2015 acbc_mskcc_2015 Adenoid Cystic Carci..
#> acc_2019 acc_2019 Adenoid Cystic Carci..
#> acc_tcga acc_tcga Adrenocortical Carci..
#> acc_tcga_pan_can_atlas_2018 acc_tcga_pan_can_atl.. Adrenocortical Carci..
#> acyc_fmi_2014 acyc_fmi_2014 Adenoid Cystic Carci..
#> ... ... ...
#> utuc_pdx_msk_2019 utuc_pdx_msk_2019 Upper Tract Urotheli..
#> uvm_tcga uvm_tcga Uveal Melanoma (TCGA..
#> uvm_tcga_pan_can_atlas_2018 uvm_tcga_pan_can_atl.. Uveal Melanoma (TCGA..
#> vsc_cuk_2018 vsc_cuk_2018 Squamous Cell Carcin..
#> wt_target_2018_pub wt_target_2018_pub Pediatric Wilms' Tum..
#> description
#> <character>
#> acbc_mskcc_2015 Whole exome sequenci..
#> acc_2019 Multi-Institute Coho..
#> acc_tcga TCGA Adrenocortical ..
#> acc_tcga_pan_can_atlas_2018 Adrenocortical Carci..
#> acyc_fmi_2014 Targeted Sequencing ..
#> ... ...
#> utuc_pdx_msk_2019 MSK-IMPACT sequencin..
#> uvm_tcga TCGA Uveal Melanoma...
#> uvm_tcga_pan_can_atlas_2018 Uveal melanoma TCGA ..
#> vsc_cuk_2018 Whole exome sequenci..
#> wt_target_2018_pub Whole-exome sequenci..