cBioPortalAnalysis

Toolkit for performing queries on cBioPortal.

Installation

R method

if (!requireNamespace("BiocManager", quietly = TRUE)) {
    install.packages("BiocManager")
}
install.packages(
    pkgs = "cBioPortalAnalysis",
    repos = c(
        "https://r.acidgenomics.com",
        BiocManager::repositories()
    )
)

Details

• RNA expression values
• Z-score normalization method

Currently using cgdsr internally, but am evaluating the new cBioPortalData package for inclusion in a future release.