Update object

updateObject(object, ..., verbose = FALSE)

# S4 method for bcbioSingleCell
updateObject(object, ..., verbose = FALSE)

Arguments

object

Object.

...

Additional arguments.

verbose

logical(1). Verbose output.

Value

Modified object.

Note

Updated 2021-02-22.

Author

Michael Steinbaugh

Examples

data(bcb) updateObject(bcb)
#> bcbioSingleCell 0.4.16 #> uploadDir: /data00/draco/acidbase/packages/bcbioSingleCell/inst/extdata/indrops #> dates(2): [bcbio] 2018-01-01; [R] 2019-08-12 #> level: genes #> sampleMetadataFile: inst/extdata/indrops/metadata.csv #> organism: Homo sapiens #> interestingGroups: sampleName #> filtered: FALSE #> class: SingleCellExperiment #> dim: 50 100 #> metadata(28): allSamples bcbioCommandsLog ... yaml originalVersion #> assays(1): counts #> rownames(50): ENSG00000071082 ENSG00000100316 ... ENSG00000269028 #> ENSG00000282105 #> rowData names(8): broadClass description ... geneName seqCoordSystem #> colnames(100): AAACACTA_CTTCGATT AAACTACA_CCACATTA ... #> TGGGAATT_ATATAGGA TGTTATCA_ACGCAGAG #> colData names(15): aggregate description ... sampleName sequence #> reducedDimNames(0): #> altExpNames(0):
## Example that depends on remote file. ## > x <- import( ## > file = file.path( ## > bcbioSingleCellTestsURL, ## > "bcbioSingleCell_0.1.0.rds" ## > ) ## > ) ## > x <- updateObject(x) ## > x