Show an object

Show an object

Usage

show(object)

# S4 method for bcbioSingleCell
show(object)

Arguments

object

Object.

Value

Console output.

Note

Updated 2022-05-09.

Author

Michael Steinbaugh

Examples

data(bcb)

## bcbioSingleCell ====
show(bcb)
#> bcbioSingleCell 0.7.0
#> uploadDir: /Users/mike/git/monorepo/r-packages/bcbioSingleCell/inst/extdata/indrops
#> dates(2): 2018-01-01 2023-10-05
#> level: genes
#> sampleMetadataFile: ../inst/extdata/indrops/metadata.csv
#> organism: Homo sapiens
#> ensemblRelease: 90
#> interestingGroups: sampleName
#> filtered: FALSE
#> class: SingleCellExperiment 
#> dim: 50 100 
#> metadata(27): allSamples bcbioCommandsLog ... wd yaml
#> assays(1): counts
#> rownames(50): ENSG00000071082 ENSG00000100316 ... ENSG00000269028
#>   ENSG00000282105
#> rowData names(9): broadClass description ... ncbiGeneId seqCoordSystem
#> colnames(100): AAACACTA_CTTCGATT AAACTACA_CCACATTA ...
#>   TGGGAATT_ATATAGGA TGTTATCA_ACGCAGAG
#> colData names(15): aggregate description ... sampleName sequence
#> reducedDimNames(0):
#> mainExpName: NULL
#> altExpNames(0):