Plot read counts per cell — plotReadsPerCell • bcbioSingleCell

Plot the distribution of read counts for all unfiltered cellular barcodes.

Usage

plotReadsPerCell(object, ...)

# S4 method for bcbioSingleCell
plotReadsPerCell(
  object,
  interestingGroups = NULL,
  geom = c("histogram", "ecdf", "violin", "ridgeline", "boxplot"),
  cutoffLine = FALSE,
  title = "Reads per cell"
)

Arguments

object: Object.
interestingGroups: character. Groups of interest to use for visualization. Corresponds to factors describing the columns of the object.
geom: character(1). Plot type. Uses match.arg() internally and defaults to the first argument in the character vector.
cutoffLine: logical(1). Include a line marking the cutoff.
title: character(1). Title.
...: Additional arguments.

Value

ggplot.

Note

Updated 2023-12-04.

Author

Michael Steinbaugh, Rory Kirchner

Examples

data(bcb)

## bcbioSingleCell ====
plotReadsPerCell(bcb, geom = "histogram")

plotReadsPerCell(bcb, geom = "ecdf")