Quality control

Quality control

Usage

plotQc(object, ...)

# S4 method for bcbioRNASeq
plotQc(object)

Arguments

object

Object.

...

Additional arguments.

Value

ggplot.

Note

Updated 2022-03-07.

Author

Michael Steinbaugh

Examples

data(bcb)

## bcbioRNASeq ====
plotQc(bcb)
#> ℹ Using "tmm" counts.
#> → Applying trimmed mean of M-values (TMM) normalization.
#> ℹ Filtered zero count rows and columns:
#> - 90 / 100 rows (90%)
#> - 6 / 6 columns (100%)
#> → Applying `log2(x + 1L)` transformation.
#> ℹ Using "vst" counts.