Plot exonic mapping rate

Ideally, at least 60 percent of total reads should map to exons for RNA-seq.

Usage

plotExonicMappingRate(object, ...)

# S4 method for bcbioRNASeq
plotExonicMappingRate(
  object,
  interestingGroups = NULL,
  limit = 0.6,
  labels = list(title = "Exonic mapping rate", subtitle = NULL, sampleAxis = NULL,
    metricAxis = "exonic mapping rate (%)"),
  flip = getOption(x = "acid.flip", default = TRUE)
)

Arguments

object

Object.

interestingGroups

character. Groups of interest to use for visualization. Corresponds to factors describing the columns of the object.

limit

numeric(1). Threshold limit.

labels

list. ggplot2 labels. See ggplot2::labs() for details.

flip

logical(1). Flip x and y axes. Recommended for plots containing many samples.

...

Additional arguments.

Value

ggplot.

Note

Updated 2022-05-09.

Author

Michael Steinbaugh, Rory Kirchner, Victor Barrera

Examples

data(bcb)

## bcbioRNASeq ====
plotExonicMappingRate(bcb)