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bcbioRNASeq is an S4 class that extends RangedSummarizedExperiment, and is designed to store a bcbio RNA-seq analysis.


bcbioRNASeq extended SummarizedExperiment prior to v0.2.0, where we migrated to RangedSummarizedExperiment.


Updated 2023-10-05.

Automatic metadata

The metadata() slot always contains:

  • Object version.

  • bcbio data provenance information.

  • File paths and timestamps.

  • R session information.


Michael Steinbaugh, Lorena Pantano