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bcbio RNA-Seq data set

Source: R/AllClasses.R
bcbioRNASeq-class.Rd

bcbioRNASeq is an S4 class that extends RangedSummarizedExperiment, and is designed to store a bcbio RNA-seq analysis.

Details

bcbioRNASeq extended SummarizedExperiment prior to v0.2.0, where we migrated to RangedSummarizedExperiment.

Note

Updated 2023-10-05.

Automatic metadata

The metadata() slot always contains:

  • Object version.

  • bcbio data provenance information.

  • File paths and timestamps.

  • R session information.

Author

Michael Steinbaugh, Lorena Pantano