bcbio RNA-seq example data set

Usage

data(bcb)

Format

An object of class bcbioRNASeq with 100 rows and 6 columns.

Author

Michael Steinbaugh, Lorena Pantano

Examples

data(bcb)
bcb
#> bcbioRNASeq 0.6.0 with 100 rows and 6 columns
#> uploadDir: /Users/mike/git/monorepo/r-packages/bcbioRNASeq/inst/extdata/bcbio
#> dates(2): 2018-03-18 2023-10-05
#> level: genes
#> caller: salmon
#> organism: Mus musculus
#> ensemblRelease: 90
#> interestingGroups(2): treatment day
#> class: RangedSummarizedExperiment 
#> dim: 100 6 
#> metadata(27): allSamples bcbioCommandsLog ... wd yaml
#> assays(7): counts aligned ... vst fpkm
#> rownames(100): ENSMUSG00000000001 ENSMUSG00000000003 ...
#>   ENSMUSG00000062661 ENSMUSG00000074340
#> rowData names(9): broadClass description ... ncbiGeneId seqCoordSystem
#> colnames(6): control_rep1 control_rep2 ... fa_day7_rep2 fa_day7_rep3
#> colData names(26): averageInsertSize averageReadLength ... treatment
#>   x5x3Bias