Skip to contents

All functions

bcbioBaseTestsURL
bcbioBase test data URL
getBarcodeCutoffFromCommands() getLevelFromCommands() getUMITypeFromCommands()
Commands log parsing functions
getGTFFileFromYAML()
Get GTF file path from YAML
getMetricsFromYAML()
Get quality control metrics from YAML
getSampleDataFromYAML()
Get sample data from YAML
importDataVersions()
Import data versions
importProgramVersions()
Import program versions
projectDir()
Project directory
projectDirPattern
Project directory grep pattern
runDate()
Run date
sampleDirs()
Sample directories