All functions

bcbioBaseTestsURL

bcbioBase test data URL

getBarcodeCutoffFromCommands() getLevelFromCommands() getUMITypeFromCommands()

Commands log parsing functions

copyToDropbox()

Copy files to Dropbox

getGTFFileFromYAML()

Get GTF file path from YAML

getMetricsFromYAML()

Get quality control metrics from YAML

getSampleDataFromYAML()

Get sample data from YAML

importDataVersions()

Import data versions

importProgramVersions()

Import program versions

projectDir()

Project directory

projectDirPattern

Project directory grep pattern

runDate()

Run date

sampleDirs()

Sample directories