Function reference • bcbioBase

All functions

bcbioBaseTestsUrl: bcbioBase test data URL

getBarcodeCutoffFromCommands() getLevelFromCommands() getUmiTypeFromCommands(): Commands log parsing functions

getGtfFileFromYaml(): Get GTF file path from YAML

getMetricsFromYaml(): Get quality control metrics from YAML

getSampleDataFromYaml(): Get sample data from YAML

importDataVersions(): Import data versions

importProgramVersions(): Import program versions

projectDir(): Project directory

projectDirPattern: Project directory grep pattern

runDate(): Run date

sampleDirs(): Sample directories