Single cell experiment

Example SingleCellExperiment containing gene-level RNA-seq data simulated by the splatter package.

Usage

data(SingleCellExperiment_splatter)

Format

An object of class SingleCellExperiment with 100 rows and 400 columns.

Value

SingleCellExperiment.

Note

Updated 2022-03-07.

See also

• splatter::splatSimulate().

• data(sc_example_counts, package = "scater").

Examples

if (requireNamespace("SingleCellExperiment", quietly = TRUE)) {
    data(SingleCellExperiment_splatter)
    class(SingleCellExperiment_splatter)
    print(SingleCellExperiment_splatter)
}
#> class: SingleCellExperiment 
#> dim: 100 400 
#> metadata(1): date
#> assays(1): counts
#> rownames(100): gene001 gene002 ... gene099 gene100
#> rowData names(10): broadClass description ... ncbiGeneId seqCoordSystem
#> colnames(400): cell001 cell002 ... cell399 cell400
#> colData names(1): sampleId
#> reducedDimNames(0):
#> mainExpName: NULL
#> altExpNames(0):