Changelog
Source:NEWS.md
AcidTest 0.9.1 (2025-05-25)
- Decreased R dependency version from 4.3 back to 4.0.
- Now formatting code with air.
AcidTest 0.7.0 (2022-06-09)
- Migrated
Seurat
andSeuratMarkersPerCluster
objects back here from pointillism, to avoiddata
NAMESPACE issues withrcmdcheck
.
AcidTest 0.5.0 (2022-03-10)
- Resaved all objects following Bioconductor 3.14 release.
- Renamed
SingleCellExperiment
toSingleCellExperiment_splatter
. - Migrated example Seurat object back to pointillism.
AcidTest 0.4.4 (2021-09-13)
- Resaved all objects.
-
SummarizedExperiment
andSummarizedExperiment_transcripts
now contain metadata defined inrowData
.
AcidTest 0.4.3 (2021-02-12)
- Resaved some objects:
GRanges
(now an expected unclassedEnsemblGenes
),RangedSummarizedExperiment
,Seurat
,SingleCellExperiment
,SingleCellExperiment_Seurat
, andSingleCellExperiment_lanesplit
.
AcidTest 0.4.2 (2021-02-05)
New data:
- Saved
SingleCellExperiment_lanesplit
example object.
Minor changes:
- Resaved objects, including transcript versions where applicable.
AcidTest 0.4.1 (2021-01-14)
Minor changes:
- Resaved metadata in strict lower camel case, where applicable.
acidtest 0.3.0 (2020-03-16)
- Resaved all example datasets.
- Now using Ensembl 99 as reference instead of 92, where applicable. This helps avoid errors in other packages, namely pfgsea due to current Ensembl server migration (until March 24th) that renders all archives inaccessible, causing biomaRt code to error out.
acidtest 0.2.14 (2020-01-28)
- Additional documentation fixes to avoid CRAN warnings related to roxygen2 not outputting correct usage example for data when
lazyData: FALSE
.
acidtest 0.2.12 (2020-01-27)
- Removed monocle3
cell_data_set
example object. Will add back when monocle3 is available on Bioconductor.
acidtest 0.2.11 (2020-01-20)
- Reverted saved version of
SingleCellExperiment
back to v0.2.8 version, as too many unit tests will fail in basejump otherwise, due to splatter creating a new random count matrix.
acidtest 0.2.10 (2020-01-19)
- Migrated
band_instruments
andband_members
(dplyr join examples) from now archived transformer package here to acidtest.
acidtest 0.2.9 (2020-01-18)
- Renamed
DataFrame
example toDFrame
, based on Bioconductor 3.10 change. - Resaved all example objects.
acidtest 0.2.4 (2019-08-13)
- Resaved
Seurat
andSingleCellExperiment_Seurat
objects. - Added additional comments regarding how to configure reticulate and UMAP to generate an example
Seurat
object with dimension reduction applied.
acidtest 0.2.3 (2019-08-10)
-
SingleCellExperiment
: Updated example to zero pad both row and column names. Previously, only the column names were padded. - Improved reticulate documentation on how to process Seurat.
acidtest 0.2.1 (2019-07-30)
-
RangedSummarizedExperiment
: Resaved with additional metadata columns inrowData
that are useful for unit testing in DESeqAnalysis package.
acidtest 0.2.0 (2019-07-21)
- Disabled lazy data loading.
- Spelled out object class names to make example data more straightforward.
- Saved additional
SingleCellExperiment
andSummarizedExperiment
examples. - There’s no currently no supported way to redirect old data names, so these changes are breaking.