Single cell experiment with lane-split technical replicates

Example SingleCellExperiment containing gene-level RNA-seq data and lane-split technical replicates.

Usage

data(SingleCellExperiment_lanesplit)

Format

An object of class SingleCellExperiment with 100 rows and 32 columns.

Value

SingleCellExperiment.

Note

Updated 2022-03-10.

Examples

if (requireNamespace("SingleCellExperiment", quietly = TRUE)) {
    data(SingleCellExperiment_lanesplit)
    class(SingleCellExperiment_lanesplit)
    print(SingleCellExperiment_lanesplit)
}
#> class: SingleCellExperiment 
#> dim: 100 32 
#> metadata(1): date
#> assays(1): counts
#> rownames(100): gene001 gene002 ... gene099 gene100
#> rowData names(10): broadClass description ... ncbiGeneId seqCoordSystem
#> colnames(32): sample_1_L001_AAAAAA_AAAAAA_AAAAAA
#>   sample_1_L002_AAAAAA_AAAAAA_AAAAAA ...
#>   sample_2_L003_TTTTTT_TTTTTT_TTTTTT sample_2_L004_TTTTTT_TTTTTT_TTTTTT
#> colData names(2): sampleId aggregate
#> reducedDimNames(0):
#> mainExpName: NULL
#> altExpNames(0):