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Single cell experiment

Source: R/SingleCellExperiment_Seurat.R
SingleCellExperiment_Seurat.Rd

Example SingleCellExperiment containing gene-level RNA-seq data.

Usage

data(SingleCellExperiment_Seurat)

Format

An object of class SingleCellExperiment with 230 rows and 80 columns.

Value

SingleCellExperiment.

Note

Updated 2022-03-04.

See also

`data(pbmc_small, package = "Seurat")`.

Examples

if (requireNamespace("SingleCellExperiment", quietly = TRUE)) {
    data(SingleCellExperiment_Seurat)
    class(SingleCellExperiment_Seurat)
    print(SingleCellExperiment_Seurat)
}
#> class: SingleCellExperiment 
#> dim: 230 80 
#> metadata(2): scaleData variableFeatures
#> assays(2): counts logcounts
#> rownames(230): ENSG00000156738 ENSG00000007312 ... ENSG00000159674
#>   ENSG00000160307
#> rowData names(6): broadClass geneBiotype ... ncbiGeneId seqCoordSystem
#> colnames(80): ATGCCAGAACGACT CATGGCCTGTGCAT ... GGAACACTTCAGAC
#>   CTTGATTGATCTTC
#> colData names(8): orig.ident nCount_RNA ... RNA_snn_res.1 ident
#> reducedDimNames(3): PCA TSNE UMAP
#> mainExpName: RNA
#> altExpNames(0):