Example SeuratMarkersPerCluster object — SeuratMarkersPerCluster • AcidTest

Example SeuratMarkersPerCluster object

Usage

data(SeuratMarkersPerCluster)

Format

An object of class SeuratMarkersPerCluster of dimension 106 x 79 x 37 x 8 x 8 x 8.

Value

SeuratMarkersPerCluster.

Note

Updated 2022-06-09.

Examples

if (requireNamespace("pointillism", quietly = TRUE)) {
    data(SeuratMarkersPerCluster)
    print(SeuratMarkersPerCluster)
}
#> SeuratMarkersPerCluster of length 3
#> $cluster0
#> DataFrame with 106 rows and 8 columns
#>     avgLog2Fc  cluster        name        padj      pct1      pct2      pvalue
#>     <numeric> <factor> <character>   <numeric> <numeric> <numeric>   <numeric>
#> 1    -6.01382        0    HLA-DPB1 2.20174e-10     0.083     0.909 9.57278e-13
#> 2    -5.61443        0    HLA-DRB1 1.76482e-09     0.083     0.864 7.67313e-12
#> 3    -4.46942        0    HLA-DPA1 8.44830e-09     0.111     0.864 3.67317e-11
#> 4    -4.29583        0     HLA-DRA 2.78096e-08     0.417     0.909 1.20911e-10
#> 5    -4.55843        0    HLA-DRB5 2.19582e-07     0.056     0.773 9.54705e-10
#> ...       ...      ...         ...         ...       ...       ...         ...
#> 102  -1.87906        0        RGS2           1     0.167     0.500  0.00775274
#> 103  -1.24190        0       BLVRA           1     0.111     0.409  0.00883721
#> 104   2.02354        0        CCL4           1     0.250     0.045  0.00952141
#> 105   1.25934        0       VDAC3           1     0.361     0.136  0.00971581
#> 106  -0.83584        0      FCER1G           1     0.389     0.705  0.00984281
#>                      ranges
#>                   <GRanges>
#> 1     6:33043703-33054978:+
#> 2     6:32546546-32557625:-
#> 3     6:33032346-33048552:-
#> 4     6:32407619-32412823:+
#> 5     6:32485120-32498064:-
#> ...                     ...
#> 102 1:192778169-192781403:+
#> 103   7:43798279-43846939:+
#> 104  17:34430983-34433014:+
#> 105   8:42249142-42263415:+
#> 106 1:161185024-161190489:+
#> 
#> ...
#> <2 more elements>