Ranged summarized experiment

Example RangedSummarizedExperiment containing gene-level RNA-seq data.

Usage

data(RangedSummarizedExperiment)

Format

An object of class RangedSummarizedExperiment with 500 rows and 12 columns.

Value

RangedSummarizedExperiment.

Details

Generated with DESeq2::makeExampleDESeqDataSet(). Contains actual gene identifiers and Ensembl annotations.

Note

Updated 2021-02-05.

Examples

if (requireNamespace("SummarizedExperiment", quietly = TRUE)) {
    data(RangedSummarizedExperiment)
    class(RangedSummarizedExperiment)
    print(RangedSummarizedExperiment)
}
#> class: RangedSummarizedExperiment 
#> dim: 500 12 
#> metadata(3): version date interestingGroups
#> assays(1): counts
#> rownames(500): gene001 gene002 ... gene499 gene500
#> rowData names(10): broadClass description ... ncbiGeneId seqCoordSystem
#> colnames(12): sample01 sample02 ... sample11 sample12
#> colData names(1): condition