Known markers example

Known markers example

Usage

data(KnownMarkers)

Format

An object of class KnownMarkers with 10 rows and 10 columns.

Value

KnownMarkers.

Note

Updated 2022-03-04.

Examples

if (requireNamespace("AcidSingleCell", quietly = TRUE)) {
    data(KnownMarkers)
    print(KnownMarkers)
}
#> KnownMarkers with 10 rows and 10 columns
#>    avgLog2Fc  cluster        name        padj      pct1      pct2      pvalue
#>    <numeric> <factor> <character>   <numeric> <numeric> <numeric>   <numeric>
#> 1   -5.61443        0    HLA-DRB1 1.76482e-09     0.083     0.864 7.67313e-12
#> 2   -4.29583        0     HLA-DRA 2.78096e-08     0.417     0.909 1.20911e-10
#> 3   -4.60444        0    HLA-DQB1 6.98096e-06     0.028     0.659 3.03520e-08
#> 4   -5.38666        0    HLA-DQA1 1.18578e-04     0.028     0.568 5.15554e-07
#> 5   -3.16357        0     HLA-DMA 3.69108e-03     0.056     0.523 1.60482e-05
#> 6    4.77966        1        IL1B 7.65795e-04     0.480     0.055 3.32954e-06
#> 7    3.00976        2    HLA-DQB1 5.60476e-05     0.789     0.246 2.43685e-07
#> 8    2.40582        2    HLA-DRB1 3.08634e-04     0.842     0.410 1.34188e-06
#> 9    2.62053        2     HLA-DRA 1.06224e-03     0.895     0.623 4.61845e-06
#> 10   2.52900        2    HLA-DQA1 1.53575e-02     0.632     0.230 6.67716e-05
#>             geneId    geneName       cellType
#>        <character> <character>       <factor>
#> 1  ENSG00000196126    HLA-DRB1 Dendritic Cell
#> 2  ENSG00000204287     HLA-DRA Dendritic Cell
#> 3  ENSG00000179344    HLA-DQB1 Dendritic Cell
#> 4  ENSG00000196735    HLA-DQA1 Dendritic Cell
#> 5  ENSG00000204257     HLA-DMA Dendritic Cell
#> 6  ENSG00000125538        IL1B Macrophage    
#> 7  ENSG00000179344    HLA-DQB1 Dendritic Cell
#> 8  ENSG00000196126    HLA-DRB1 Dendritic Cell
#> 9  ENSG00000204287     HLA-DRA Dendritic Cell
#> 10 ENSG00000196735    HLA-DQA1 Dendritic Cell