Gene-to-symbol mappings

Usage

GeneToSymbol(object, ...)

# S4 method for FgseaList
GeneToSymbol(object)

Arguments

object: Object.
...: Additional arguments.

Value

GeneToSymbol.

Details

For some organisms, gene identifiers and gene names do not map 1:1 (e.g. Homo sapiens and Mus musculus). Refer to the format argument here in the documentation for approaches that deal with this issue.

Note

Updated 2022-04-27.

Examples

data(fgsea)

## FgseaList ====
object <- fgsea
g2s <- GeneToSymbol(object)
print(g2s)
#> GeneToSymbol with 988 rows and 2 columns
#>              geneId    geneName
#>         <character> <character>
#> 1   ENSG00000024048        UBR2
#> 2   ENSG00000016490       CLCA1
#> 3   ENSG00000051620       HEBP2
#> 4   ENSG00000005022     SLC25A5
#> 5   ENSG00000063322       MED29
#> ...             ...         ...
#> 984 ENSG00000047346     FAM214A
#> 985 ENSG00000055955       ITIH4
#> 986 ENSG00000003987       MTMR7
#> 987 ENSG00000004142     POLDIP2
#> 988 ENSG00000065675       PRKCQ