Export data from R

Usage

export(object, con, ...)

# S4 method for TxToGene,character
export(object, con, ...)

Arguments

object: Object.
con: character(1) or connection. Data connection. Use character(1) to represent a file path.
...: Additional arguments.

Value

Invisible character or list of file paths.

Details

The TxToGene method automatically disables writing of column names, which is the intended input format for tximport.

Note

Updated 2023-09-20.

Examples

object <- S4Vectors::DataFrame(
    "txId" = c(
        "tx0001",
        "tx0002",
        "tx0003",
        "tx0004"
    ),
    "geneId" = c(
        "gene0001",
        "gene0001",
        "gene0002",
        "gene0002"
    )
)
object <- TxToGene(object)
con <- file.path(AcidBase::tempdir2(), "tx2gene.csv")
export(object = object, con = con)
#> ℹ Exporting <TxToGene> intentionally without dimnames.
#> → Exporting /private/var/folders/l1/8y8sjzmn15v49jgrqglghcfr0000gn/T/Rtmp4LPYq0/L2TXQsfkpM-170173627032415/tx2gene.csv using base::`write.table()`.
x <- readLines(con, n = 4L)
print(x)
#> [1] "\"tx0001\",\"gene0001\"" "\"tx0002\",\"gene0001\""
#> [3] "\"tx0003\",\"gene0002\"" "\"tx0004\",\"gene0002\""
AcidBase::unlink2(con)