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Transcript-to-gene mappings

Source: R/AllGenerics.R, R/TxToGene-methods.R
TxToGene.Rd

Transcript-to-gene mappings

Usage

TxToGene(object, ...)

# S4 method for class 'DFrame'
TxToGene(object, quiet = FALSE)

# S4 method for class 'GRanges'
TxToGene(object, ...)

# S4 method for class 'GRangesList'
TxToGene(object, ...)

# S4 method for class 'data.frame'
TxToGene(object, ...)

# S4 method for class 'matrix'
TxToGene(object, ...)

Arguments

object

Object.

quiet

logical(1). Perform command quietly, suppressing messages.

...

Arguments pass through to DFrame method.

Value

TxToGene.

Note

Updated 2023-11-29.

See also

makeTxToGene().

Examples

## DFrame ====
df <- S4Vectors::DataFrame(
    "txId" = c(
        "ENST00000635602.1",
        "ENST00000635506.1"
    ),
    "geneId" = c(
        "ENSG00000283061.1",
        "ENSG00000283061.1"
    )
)
object <- TxToGene(df)
print(object)
#> TxToGene with 2 rows and 2 columns
#>                txId            geneId
#>         <character>       <character>
#> 1 ENST00000635506.1 ENSG00000283061.1
#> 2 ENST00000635602.1 ENSG00000283061.1