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All functions

appendToBody()
Append values to function body
barcodePattern
Single-sell barcode pattern
basenameSansExt()
Base name without the file extension
classContains()
Get the class contained in a specificed class definition
coerceToList()
Coerce to list
collapseToPathString()
Collapse the input to a PATH string.
compress() decompress()
Compress or decompress a file
dots()
Extract dots from function
download()
Download a file from the Internet
fileDepth()
File depth
fileExt()
File extension
forceDetach()
Force detach packages
genomeMetadataNames
Slot names in metadata containing genome information
geometricMean()
Geometric mean
gitCurrentBranch() gitDefaultBranch()
Git branch strings
headtail()
Return the first and last parts of an object
initDir()
Initialize directory
intersectAll()
Intersection of more than two vectors
intersectionMatrix()
Intersection matrix
lanePattern
Sequencing lane grep pattern
foldChangeToLogRatio() logRatioToFoldChange()
Interconvert log ratio and fold change values
majorVersion()
Major version
metadataDenylist
Sample metadata denylist
methodFunction() methodFormals()
Access the data inside an S4 method definition
metricsCols
Quality control metric columns
minorVersion()
Minor version
missingOrNULL-class
Missing or NULL class union
addToPathEnd() addToPathStart() removeFromPath()
System path string handlers
params
Shared parameter documentation
parentDirectory() parentDir()
Parent directory recursion
pasteURL()
Concatenate strings to form a URL
printString()
Print string
rankedMatrix()
Calculate a ranked matrix
realpath()
Express file paths in canonical form
requireNamespaces()
Require package namespaces
sanitizeVersion()
Sanitize version
sem()
Standard error of the mean
shell()
Invoke a command in the system command-line shell
showHeader()
Header for object show method
showSlotInfo()
Show slot information
simpleClass()
Simple class of object
splitPathString()
Split path string environment variable
standardizeCall()
Standardize call
uniquePathString()
Unique path string
updateMessage
Update message