Skip to contents

Version 0.1

pointillism 0.1.0 (2018-08-10)

  • Initial release.

pointillism 0.1.1 (2018-08-20)

New functions:

  • Now exporting runZinbwave and hasZinbwave, which were previously internal functions called by diffExp.

Minor changes:

  • Improved internal handling of assays for objects that have zinbwave calculations applied. Now it doesn’t attempt to keep only the counts assay.

pointillism 0.1.2 (2018-08-22)

New functions:

  • clusterID: S4 generic that returns the cell cluster identity mappings as a factor for all cells.
  • findMarkers: Utility function that wraps diffExp to identify cluster- specific genes across all clusters.

Minor changes:

  • Converted runZinbwave to an S4 method that works on SingleCellExperiment. For seurat objects, coerce to SingleCellExperiment before calculating weights.
  • plotDot now uses default ggplot2 color scale, unless specified.
  • plotReducedDim, plotMarker: theme_paperwhite is no longer used by default. Removed grid and aspectRatio arguments to simplify ggplot2 code handling.