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Version 0.7

pipette 0.7.0 (2021-09-01)

Major changes:

  • Updated minimum Bioconductor release to 3.13.
  • import: Added support for FASTA and FASTQ files, which are loaded via Biostrings package internally. Refer to readDNAStringSet for details.
  • import: Improved makeNames consistency for methods that import two-dimension arrays (e.g. data.frame).

Minor changes:

  • Improved package error messages and other alerts with AcidCLI update. Instead of calling stop internally, now using abort, which supports stylized messages (via cli package).
  • transmit: Hardened working example against NCBI FTP server failure.
  • Package is now back to 100% code coverage, with improved coverage of primary import and export functions.

pipette 0.7.1 (2021-09-08)

Major changes:

  • Switched bapply import from AcidBase to goalie.
  • Updated internal basejump dependencies.
  • Improved installation instructions.

pipette 0.7.2 (2021-09-22)

Minor changes:

  • import: Added rownameCol argument for import of delimited files, such as CSV, TSV, and Excel. This is a non-breaking change that enables the user to manually define the rowname column upon import, which can be useful when working with files from public databases such as GEO.
  • Updated suggested readr and vroom versions, now that they’re available on Bioconda.