Skip to contents

PANTHER database annotations

Source: R/AllGenerators.R
PANTHER.Rd

PANTHER gene ontology definitions. PANTHER stands for Protein ANalysis THrough Evolutionary Relationships.

Usage

PANTHER(organism, release = "19.0")

Arguments

organism

character(1). Full Latin organism name (e.g. "Homo sapiens").

release

character(1) or NULL. PANTHER release version. If NULL, defaults to current release. Consult the PANTHER website for a list of release versions available from the FTP server (e.g. "17.0").

Value

PANTHER.

Note

Updated 2025-05-25.

Suported organisms

  • Caenorhabditis elegans

  • Drosophila melanogaster

  • Homo sapiens

  • Mus musculus

Examples

x <- PANTHER(organism = "Homo sapiens")
#> → Downloading PANTHER 19.0 annotations for Homo sapiens.
#> Error in stop(simpleError(message = msg, call = if (p) {    sys.call(p)})): Assert failure.
#> [1] isAnExistingUrl(url) is not TRUE.
#> Cause: URL doesn't exist
print(x)
#> Error: object 'x' not found