Peptides — peptides • WormBase

Peptides

Usage

peptides(release = getOption(x = "wormbase.release", default = NULL))

Arguments

release: character(1) or NULL. WormBase release. If NULL (recommended), defaults to current production release release available on the WormBase website. Legacy releases can be specified as a character string (e.g. "WS267").

Value

SplitDataFrameList. Split by geneId column.

Note

Updated 2023-09-25.

Examples

x <- peptides()
#> → Importing /private/var/folders/l1/8y8sjzmn15v49jgrqglghcfr0000gn/T/RtmpQtkjUp/MWaGf9KXOi-169594616189051/wormpep.table289 using base::`readLines()`.
print(x)
#> SplitDataFrameList of length 19984
#> $WBGene00000001
#> DataFrame with 1 row and 8 columns
#>           geneId     wormpep      status     uniprot       insdc
#>      <character> <character> <character> <character> <character>
#> 1 WBGene00000001     CE23248   Confirmed      G5EDP9  CCD66201.1
#>                  product    sequence       locus
#>              <character> <character> <character>
#> 1 SH2 domain-containin..  Y110A7A.10       aap-1
#> 
#> $WBGene00000002
#> DataFrame with 1 row and 8 columns
#>           geneId     wormpep      status     uniprot       insdc
#>      <character> <character> <character> <character> <character>
#> 1 WBGene00000002     CE03266   Confirmed      Q19834  CAA92459.1
#>                  product    sequence       locus
#>              <character> <character> <character>
#> 1 Large neutral amino ..     F27C8.1       aat-1
#> 
#> $WBGene00000003
#> DataFrame with 1 row and 8 columns
#>           geneId     wormpep      status     uniprot       insdc     product
#>      <character> <character> <character> <character> <character> <character>
#> 1 WBGene00000003     CE32853   Confirmed      Q19151  CCD68934.1          NA
#>      sequence       locus
#>   <character> <character>
#> 1     F07C3.7       aat-2
#> 
#> ...
#> <19981 more elements>