Best BLASTP hits

Usage

blastp(release = getOption(x = "wormbase.release", default = NULL))

Arguments

release: character(1) or NULL. WormBase release. If NULL (recommended), defaults to current production release release available on the WormBase website. Legacy releases can be specified as a character string (e.g. "WS267").

Value

SplitDataFrameList. Split by wormpep column.

Note

Updated 2023-09-25.

Examples

x <- blastp()
#> → Importing /Users/mike/.cache/R/WormBase/BiocFileCache/bb8f33467f61_c_elegans.PRJNA13758.WS289.best_blastp_hits.txt.gz using base::`read.table()`.
print(x)
#> SplitDataFrameList of length 14799
#> $CE00004
#> DataFrame with 1 row and 3 columns
#>       wormpep         peptide    eValue
#>   <character>     <character> <numeric>
#> 1     CE00004 ENSP00000308897     1e-46
#> 
#> $CE00015
#> DataFrame with 1 row and 3 columns
#>       wormpep         peptide    eValue
#>   <character>     <character> <numeric>
#> 1     CE00015 ENSP00000444192         0
#> 
#> $CE00034
#> DataFrame with 1 row and 3 columns
#>       wormpep         peptide    eValue
#>   <character>     <character> <numeric>
#> 1     CE00034 ENSP00000384886     4e-19
#> 
#> ...
#> <14796 more elements>