Update object
Usage
updateObject(object, ..., verbose = FALSE)
# S4 method for DESeqAnalysis
updateObject(object, ..., verbose = FALSE)Arguments
- object
Object.
- ...
Additional arguments.
- verbose
logical(1). Run the function with verbose output.
DESeqAnalysis
In the v0.1.8 update, we improved the class to contain Annotated virtual
class, which adds support for the metadata() slot. Objects saved by older
package versions must be updated to account for this change.
Examples
data(deseq)
## DESeqAnalysis ====
updateObject(deseq)
#> DESeqAnalysis 0.7.1; DESeq2 1.41.12
#> data:
#> dim: 500 12
#> metadata(1): version
#> assays(4): counts mu H cooks
#> rownames(500): gene1 gene2 ... gene499 gene500
#> rowData names(40): broadClass description ... deviance maxCooks
#> colnames(12): sample1 sample2 ... sample11 sample12
#> colData names(3): condition treatment sizeFactor
#> transformType: varianceStabilizingTransformation
#> resultsNames(2): condition_B_vs_A treatment_D_vs_C
#> alphaThreshold: 0.01
#> lfcShrinkType: apeglm