Update object

updateObject(object, ..., verbose = FALSE)

# S4 method for DESeqAnalysis
updateObject(object, ..., verbose = FALSE)

Arguments

object

Object.

...

Additional arguments.

verbose

logical(1). Verbose output.

Value

DESeqAnalysis.

Note

Updated 2021-02-10.

DESeqAnalysis

In the v0.1.8 update, we improved the class to contain Annotated virtual class, which adds support for the metadata() slot. Objects saved by older package versions must be updated to account for this change.

Examples

data(deseq) ## DESeqAnalysis ==== updateObject(deseq)
#> DESeqAnalysis 0.2.18; DESeq2 1.26.0 #> data: #> dim: 500 12 #> metadata(3): version date interestingGroups #> assays(4): counts mu H cooks #> rownames(500): gene001 gene002 ... gene499 gene500 #> rowData names(38): broadClass description ... deviance maxCooks #> colnames(12): sample01 sample02 ... sample11 sample12 #> colData names(3): condition treatment sizeFactor #> transformType: varianceStabilizingTransformation #> resultsNames(2): condition_B_vs_A treatment_D_vs_C #> alphaThreshold: 0.01 #> lfcShrinkType: apeglm