Stacked bar plot of DEGs

Usage

plotDegStackedBar(object, ...)

# S4 method for class 'DESeqAnalysis'
plotDegStackedBar(
  object,
  i = NULL,
  direction = c("both", "up", "down"),
  orderBySize = FALSE,
  label = TRUE,
  flip = TRUE
)

Arguments

object: Object.
i: character, numeric, or NULL. Names or range of results. If set NULL, include all results.
direction: character(1). Include "both", "up", or "down" directions.
orderBySize: logical(1). Order contrasts by DEG set size.
label: logical(1). Label the number of DEGs per contrast on the plot.
flip: logical(1). Flip x and y axes. Recommended for plots containing many samples.
...: Additional arguments.

Value

ggplot.

Note

Updated 2022-05-18.

Examples

data(deseq)

## DESeqAnalysis ====
plotDegStackedBar(deseq)