UpSet plot of directional DEG intersections across contrasts

plotDEGUpset(object, ...)

# S4 method for DESeqAnalysis
plotDEGUpset(object, i = NULL, direction = c("both", "up", "down"), ...)

Arguments

object

Object.

i

character, numeric, or NULL. Names or range of results. If set NULL, include all results.

direction

character(1). Include "both", "up", or "down" directions.

...

Passthrough arguments to AcidPlots::plotUpset().

Value

Plot.

Note

Updated 2020-08-25.

Examples

data(deseq) ## DESeqAnalysis ==== plotDEGUpset(deseq)
#> → condition_B_vs_A (shrunken LFC)
#> → condition_B_vs_A (shrunken LFC)
#> → treatment_D_vs_C (shrunken LFC)
#> → treatment_D_vs_C (shrunken LFC)