Shrunken log2 fold change (LFC) type — lfcShrinkType • DESeqAnalysis

Shrunken log2 fold change (LFC) type

Usage

lfcShrinkType(object, ...)

# S4 method for DESeqAnalysis
lfcShrinkType(object)

# S4 method for DESeqAnalysisList
lfcShrinkType(object)

# S4 method for DESeqResults
lfcShrinkType(object)

# S4 method for DESeqResultsList
lfcShrinkType(object)

Arguments

object: Object.
...: Additional arguments.

Value

character(1) or NULL. Name of adaptive shrinkage method applied (e.g. "apeglm" or "ashr").

Note

Updated 2021-03-12.

See also

DESeq2::lfcShrink().

Examples

data(deseq)

## DESeqAnalysis ====
lfcShrinkType(deseq)
#> [1] "apeglm"