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Shrunken log2 fold change (LFC) type

Source: R/AllGenerics.R, R/lfcShrinkType-methods.R
lfcShrinkType.Rd

Shrunken log2 fold change (LFC) type

Usage

lfcShrinkType(object, ...)

# S4 method for class 'DESeqAnalysis'
lfcShrinkType(object)

# S4 method for class 'DESeqAnalysisList'
lfcShrinkType(object)

# S4 method for class 'DESeqResults'
lfcShrinkType(object)

# S4 method for class 'DESeqResultsList'
lfcShrinkType(object)

Arguments

object

Object.

...

Additional arguments.

Value

character(1) or NULL. Name of adaptive shrinkage method applied (e.g. "apeglm" or "ashr").

Note

Updated 2021-03-12.

See also

DESeq2::lfcShrink().

Examples

data(deseq)

## DESeqAnalysis ====
lfcShrinkType(deseq)
#> [1] "apeglm"