Minimal DESeq2 example analysis

Minimal DESeq2 example analysis

Usage

data(deseqMinimal)

Format

An object of class DESeqAnalysis with 50 rows and 4 columns.

Note

Updated 2022-05-17.

Author

Michael Steinbaugh

Examples

data(deseqMinimal)
print(deseqMinimal)
#> DESeqAnalysis 0.7.1; DESeq2 1.41.12
#> data:
#>   dim: 50 4 
#>   metadata(1): version
#>   assays(4): counts mu H cooks
#>   rownames(50): gene1 gene2 ... gene49 gene50
#>   rowData names(25): trueIntercept trueBeta ... deviance maxCooks
#>   colnames(4): sample1 sample2 sample3 sample4
#>   colData names(2): condition sizeFactor
#> transformType: varianceStabilizingTransformation
#> resultsNames: condition_B_vs_A
#> alphaThreshold: 0.1