Minimal DESeq2 differential expression analysis.

data(deseq)

Format

An object of class DESeqAnalysis with 500 rows and 12 columns.

Note

Updated 2021-06-29.

Author

Michael Steinbaugh

Examples

data(deseq) deseq
#> DESeqAnalysis 0.2.18; DESeq2 1.26.0 #> data: #> dim: 500 12 #> metadata(3): version date interestingGroups #> assays(4): counts mu H cooks #> rownames(500): gene001 gene002 ... gene499 gene500 #> rowData names(38): broadClass description ... deviance maxCooks #> colnames(12): sample01 sample02 ... sample11 sample12 #> colData names(3): condition treatment sizeFactor #> transformType: varianceStabilizingTransformation #> resultsNames(2): condition_B_vs_A treatment_D_vs_C #> alphaThreshold: 0.01 #> lfcShrinkType: apeglm