DESeq2 example analysis

DESeq2 example analysis

Usage

data(deseq)

Format

An object of class DESeqAnalysis with 500 rows and 12 columns.

Note

Updated 2022-05-17.

Author

Michael Steinbaugh

Examples

data(deseq)
print(deseq)
#> DESeqAnalysis 0.7.1; DESeq2 1.41.12
#> data:
#>   dim: 500 12 
#>   metadata(1): version
#>   assays(4): counts mu H cooks
#>   rownames(500): gene1 gene2 ... gene499 gene500
#>   rowData names(40): broadClass description ... deviance maxCooks
#>   colnames(12): sample1 sample2 ... sample11 sample12
#>   colData names(3): condition treatment sizeFactor
#> transformType: varianceStabilizingTransformation
#> resultsNames(2): condition_B_vs_A treatment_D_vs_C
#> alphaThreshold: 0.01
#> lfcShrinkType: apeglm