List of DESeqDataSet example objects

data(dds_list)

Format

An object of class list of length 3.

Note

Updated 2021-06-29.

Author

Michael Steinbaugh

Examples

data(dds_list) dds_list
#> $two_group_comparison #> class: DESeqDataSet #> dim: 1000 4 #> metadata(1): version #> assays(4): counts mu H cooks #> rownames(1000): gene1 gene2 ... gene999 gene1000 #> rowData names(25): trueIntercept trueBeta ... deviance maxCooks #> colnames(4): sample1 sample2 sample3 sample4 #> colData names(2): condition sizeFactor #> #> $two_conditions_two_genotypes #> class: DESeqDataSet #> dim: 100 12 #> metadata(1): version #> assays(4): counts mu H cooks #> rownames(100): gene1 gene2 ... gene99 gene100 #> rowData names(33): trueIntercept trueBeta ... deviance maxCooks #> colnames(12): sample1 sample2 ... sample11 sample12 #> colData names(3): condition genotype sizeFactor #> #> $two_conditions_three_genotypes #> class: DESeqDataSet #> dim: 100 18 #> metadata(1): version #> assays(4): counts mu H cooks #> rownames(100): gene1 gene2 ... gene99 gene100 #> rowData names(41): trueIntercept trueBeta ... deviance maxCooks #> colnames(18): sample1 sample2 ... sample17 sample18 #> colData names(3): condition genotype sizeFactor #>