Skip to contents

Combine multiple objects

Source: R/AllGenerics.R, R/combine-methods.R
combine.Rd

Combine multiple objects

Usage

combine(x, y, ...)

# S4 method for class 'DESeqAnalysis,DESeqAnalysis'
combine(x, y)

Arguments

x

Object.

y

Object.

...

Additional arguments.

Value

Modified object.

Details

Combines the results from 2 separate DESeqAnalysis objects. Note that the internal DESeqDataSet and DESeqTransform objects slotted in x and y must be identical. The respective results must not contain any intersecting names. The lfcShrink slot is optional but must be either defined in both objects or NULL in both objects.

Note

Updated 2022-03-08.

Examples

data(deseq)

## DESeqAnalysis ====
x <- deseq
y <- deseq
resultsNames(x) <- paste0("x_", resultsNames(x))
resultsNames(y) <- paste0("y_", resultsNames(y))

object <- combine(x, y)
#> ℹ Combining results into single DESeqAnalysis object.
#> x: [1] "x_condition_B_vs_A" "x_treatment_D_vs_C"
#> y: [1] "y_condition_B_vs_A" "y_treatment_D_vs_C"
resultsNames(object)
#> [1] "x_condition_B_vs_A" "x_treatment_D_vs_C" "y_condition_B_vs_A"
#> [4] "y_treatment_D_vs_C"