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Base mean threshold

Source: R/AllGenerics.R, R/baseMeanThreshold-methods.R
baseMeanThreshold.Rd

Base mean threshold

Usage

baseMeanThreshold(object, ...)
baseMeanThreshold(object, ...) <- value

# S4 method for DESeqAnalysis
baseMeanThreshold(object)

# S4 method for DESeqAnalysisList
baseMeanThreshold(object)

# S4 method for DESeqResults
baseMeanThreshold(object)

# S4 method for DESeqResultsList
baseMeanThreshold(object)

# S4 method for DESeqAnalysis,numeric
baseMeanThreshold(object) <- value

# S4 method for DESeqAnalysis,`NULL`
baseMeanThreshold(object) <- value

# S4 method for DESeqAnalysisList,numeric
baseMeanThreshold(object) <- value

# S4 method for DESeqAnalysisList,`NULL`
baseMeanThreshold(object) <- value

# S4 method for DESeqResults,numeric
baseMeanThreshold(object) <- value

# S4 method for DESeqResults,`NULL`
baseMeanThreshold(object) <- value

# S4 method for DESeqResultsList,numeric
baseMeanThreshold(object) <- value

# S4 method for DESeqResultsList,`NULL`
baseMeanThreshold(object) <- value

Arguments

object

Object.

value

Value to assign.

...

Additional arguments.

Value

numeric(1). Base mean cutoff level.

Note

Updated 2021-03-12.

Examples

data(deseq)

## DESeqAnalysis ====
object <- deseq
baseMeanThreshold(object) <- 100L
baseMeanThreshold(object)
#> [1] 100