Base mean threshold — baseMeanThreshold • DESeqAnalysis

Base mean threshold

Usage

baseMeanThreshold(object, ...)
baseMeanThreshold(object, ...) <- value

# S4 method for class 'DESeqAnalysis'
baseMeanThreshold(object)

# S4 method for class 'DESeqAnalysisList'
baseMeanThreshold(object)

# S4 method for class 'DESeqResults'
baseMeanThreshold(object)

# S4 method for class 'DESeqResultsList'
baseMeanThreshold(object)

# S4 method for class 'DESeqAnalysis,numeric'
baseMeanThreshold(object) <- value

# S4 method for class 'DESeqAnalysis,NULL'
baseMeanThreshold(object) <- value

# S4 method for class 'DESeqAnalysisList,numeric'
baseMeanThreshold(object) <- value

# S4 method for class 'DESeqAnalysisList,NULL'
baseMeanThreshold(object) <- value

# S4 method for class 'DESeqResults,numeric'
baseMeanThreshold(object) <- value

# S4 method for class 'DESeqResults,NULL'
baseMeanThreshold(object) <- value

# S4 method for class 'DESeqResultsList,numeric'
baseMeanThreshold(object) <- value

# S4 method for class 'DESeqResultsList,NULL'
baseMeanThreshold(object) <- value

Arguments

object: Object.
value: Value to assign.
...: Additional arguments.

Value

numeric(1). Base mean cutoff level.

Note

Updated 2021-03-12.

Examples

data(deseq)

## DESeqAnalysis ====
object <- deseq
baseMeanThreshold(object) <- 100L
baseMeanThreshold(object)
#> [1] 100