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Alpha threshold

Source: R/AllGenerics.R, R/alphaThreshold-methods.R
alphaThreshold.Rd

Alpha threshold

Usage

alphaThreshold(object, ...)
alphaThreshold(object, ...) <- value

# S4 method for DESeqAnalysis
alphaThreshold(object)

# S4 method for DESeqAnalysisList
alphaThreshold(object)

# S4 method for DESeqResults
alphaThreshold(object)

# S4 method for DESeqResultsList
alphaThreshold(object)

# S4 method for DESeqAnalysis,numeric
alphaThreshold(object) <- value

# S4 method for DESeqAnalysis,`NULL`
alphaThreshold(object) <- value

# S4 method for DESeqAnalysisList,numeric
alphaThreshold(object) <- value

# S4 method for DESeqAnalysisList,`NULL`
alphaThreshold(object) <- value

# S4 method for DESeqResults,numeric
alphaThreshold(object) <- value

# S4 method for DESeqResultsList,numeric
alphaThreshold(object) <- value

# S4 method for DESeqResultsList,`NULL`
alphaThreshold(object) <- value

Arguments

object

Object.

value

Value to assign.

...

Additional arguments.

Value

numeric(1). Alpha cutoff level.

Details

Assumes 0.01 by default if unset.

Note

Updated 2021-03-10.

Examples

data(deseq)

## DESeqAnalysis ====
object <- deseq
alphaThreshold(object) <- 0.05
alphaThreshold(object)
#> [1] 0.05