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Alpha threshold

Source: R/AllGenerics.R, R/alphaThreshold-methods.R
alphaThreshold.Rd

Alpha threshold

Usage

alphaThreshold(object, ...)
alphaThreshold(object, ...) <- value

# S4 method for class 'DESeqAnalysis'
alphaThreshold(object)

# S4 method for class 'DESeqAnalysisList'
alphaThreshold(object)

# S4 method for class 'DESeqResults'
alphaThreshold(object)

# S4 method for class 'DESeqResultsList'
alphaThreshold(object)

# S4 method for class 'DESeqAnalysis,numeric'
alphaThreshold(object) <- value

# S4 method for class 'DESeqAnalysis,NULL'
alphaThreshold(object) <- value

# S4 method for class 'DESeqAnalysisList,numeric'
alphaThreshold(object) <- value

# S4 method for class 'DESeqAnalysisList,NULL'
alphaThreshold(object) <- value

# S4 method for class 'DESeqResults,numeric'
alphaThreshold(object) <- value

# S4 method for class 'DESeqResultsList,numeric'
alphaThreshold(object) <- value

# S4 method for class 'DESeqResultsList,NULL'
alphaThreshold(object) <- value

Arguments

object

Object.

value

Value to assign.

...

Additional arguments.

Value

numeric(1). Alpha cutoff level.

Details

Assumes 0.01 by default if unset.

Note

Updated 2021-03-10.

Examples

data(deseq)

## DESeqAnalysis ====
object <- deseq
alphaThreshold(object) <- 0.05
alphaThreshold(object)
#> [1] 0.05