RNAi example data set

RNAi example data set

data(rnai)

Format

An object of class GeneEffect with 100 rows and 50 columns.

Value

DESeqAnalysis.

Note

Updated 2021-06-09.

Author

Michael Steinbaugh

Examples

data(rnai)
print(rnai)
#> GeneEffect 0.2.0 of length 100
#> dataset: demeter2_data_v6
#> libraryType: rnai
#> project: combined
#> scoringMethod: demeter2
#> date: 2021-07-19
#> releaseDate: 2020-04
#> class: SummarizedExperiment 
#> dim: 100 50 
#> metadata(14): controlCommonEssentials controlNonessentials ... wd yaml
#> assays(1): effect
#> rownames(100): A1BG_1 A1CF_29974 ... ABL1_25 ABL2_27
#> rowData names(13): chromosome dbXrefs ... typeOfGene xTaxId
#> colnames(50): A101D_SKIN A1207_CENTRAL_NERVOUS_SYSTEM ... CAL120_BREAST
#>   CAL12T_LUNG
#> colData names(15): ccleId cellLineName ...
#>   novartisPathologistAnnotation novartisPrimarySite