Import Co-dependency scores

Import Co-dependency scores

Codependencies(
  gene,
  dataset = c("Chronos_Combined", "CERES_Combined", "RNAi_merged")
)

Arguments

gene	character(1). Gene identifier.
dataset	character(1). DepMap dataset release name.

Value

Codependencies.

Note

Updated 2021-07-19.

See also

• https://forum.depmap.org/t/down-load-of-co-dependencies/175/

• Python script for processing of all co-dependency scores: https://gist.github.com/pgm/ac2ac4c664ef81200ce49133cc4cee02

Examples

x <- Codependencies(gene = "SOX10")
#> → Downloading DepMap file <https://depmap.org/portal/gene/SOX10/top_correlations?dataset_name=Chronos_Combined>.
#> → Importing /Users/mike/.cache/R/DepMapAnalysis/117e57b06a301_top_correlations%3Fdataset_name%3DChronos_Combined using data.table::`fread()`.