Import CCLE expression data

Source: R/CCLEExpressionData.R

Import CCLE expression data

CCLEExpressionData(
  dataset = c("depmap_public_21q2", "depmap_public_21q1", "depmap_public_20q4v2",
    "depmap_public_20q3", "depmap_public_20q2", "depmap_public_20q1")
)

Arguments

dataset

character(1). DepMap dataset release name.

Value

CCLEExpressionData.

Note

Updated 2021-07-07.

Examples

object <- CCLEExpressionData()

#> → Downloading DepMap file <https://ndownloader.figshare.com/files/27902091>.
#> → Importing /Users/mike/.cache/R/DepMapAnalysis/f54038b7a977_27902091 using data.table::`fread()`.
#> → Downloading Homo sapiens gene info from NCBI at <ftp://ftp.ncbi.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz>.
#> → Importing /Users/mike/.cache/R/AcidGenomes/50321924c0cb_Homo_sapiens.gene_info.gz using data.table::`fread()`.
#> ! 3 retired NCBI Entrez identifiers in data set: BCAR3_723788, MICAL2_84953, USP4_107986084.
#> → Downloading DepMap file <https://ndownloader.figshare.com/files/27902376>.
#> → Importing /Users/mike/.cache/R/DepMapAnalysis/66871289d630_27902376 using data.table::`fread()`.
#> ! 1 missing cell line in `colData`: ACH_001316.
dim(object)

#> [1] 19174  1378